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Group: JacksonLab - library [21 articles]

Recent papers posted by members of the JacksonLab group
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  • Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites.
    Proc Natl Acad Sci U S A, Vol. 104, No. 17. (24 April 2007), pp. 7145-7150.
    by X Xie, TS Mikkelsen, A Gnirke, K Lindblad-Toh, M Kellis, ES Lander
    posted to mammals ctcf by cisevol to the group JacksonLab on 2009-01-04 22:45:16 as ** along with 5 people aprasad xwbcn olympos rschulz bpcusack
  • Replication forks, chromatin loops and dormant replication origins
    Genome Biology, Vol. 9 (30 December 2008), 244.
    by Julian J Blow, Xin Q Ge
    posted to replication mammals by cisevol to the group JacksonLab on 2008-12-31 13:57:58 as **
  • Prediction of regulatory elements in mammalian genomes using chromatin signatures
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Kyoung J Won, Iouri Chepelev, Bing Ren, Wei Wang
    posted to no-tag by polivares to the group JacksonLab on 2008-12-22 15:22:02 as ** along with 1 person taguchi
  • Structural properties of replication origins in yeast DNA sequences
    posted to po by polivares to the group JacksonLab on 2008-12-15 19:02:59 as **
  • ReplicationDomain: a visualization tool and comparative database for genome-wide replication timing data
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Nodin Weddington, Alexander Stuy, Ichiro Hiratani, Tyrone Ryba, Tomoki Yokochi, David Gilbert
    posted to replication by cisevol to the group JacksonLab on 2008-12-11 21:47:32 as **
  • Assaying the regulatory potential of mammalian conserved non-coding sequences in human cells
    Genome Biology, Vol. 9 (02 December 2008), R168.
    by Catia, John A Stamatoyannopoulos
    posted to noncoding mammals by cisevol to the group JacksonLab on 2008-12-05 09:37:58 as ** along with 6 people and 2 groups djkt Zephyrus oelemento xianjun samgj maximilianh Roswell Cancer Crosstalk BergmanLab
  • Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals
    PLoS Comput Biol, Vol. 4, No. 11. (7 November 2008), e1000216.
    by Yair Field, Noam Kaplan, Yvonne Fondufe-Mittendorf, Irene K Moore, Eilon Sharon, Yaniv Lubling, Jonathan Widom, Eran Segal
    posted to replication nucleosome by cisevol to the group JacksonLab on 2008-11-29 09:40:47 as ** along with 3 people cabbagesofdoom djkt caseybrown
  • Defrosting the Digital Library: Bibliographic Tools for the Next Generation Web
    PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000204.
    by Duncan Hull, Steve R Pettifer, Douglas B Kell
    posted to social citeulike bookmarking by cisevol to the group JacksonLab on 2008-11-10 21:58:56 as ** along with 80 people and 7 groups OriginalLurch sototozo akraemer thegoose kharke niallhaslam rdmagnuson JuanGiarrizzo pkonings jennialp lgibson rmasur GJNauta puchu rrbarb amarois mneeley dr_lee_xray IRTADOC zilvlan curthh mount_misery narroyo rdiaz treangen hpaces bumatic BerndBerndsen esterhasz phreeza dbk rempeljl teachingaging cs02 joseph_x_zhou continea Rosetta fletchad Betelgeuse60 tomroper 1971biblio timrwatkins rschulz ryan smithrise silberbauer natstreet pick600 xjlibod ukppdadsr robertlischke bookwormzz NIlz junwang4 taguchi tag barry kristgy caseybrown Gaetan bcondon lynnefox marekrud nuin sdgsilvana ckai1 guhjy neils carlfulp norris jago druvus alhoori emayorga GeeSharpMinor fgibson chad_davis Zephyrus leonardo dullhunk MEHTRadiology Département Hypermédia - Master NET BergmanLab McCammon kpa-resources structural_bioinformatics Roswell Cancer Crosstalk
  • Global Reorganization of Replication Domains During Embryonic Stem Cell Differentiation
    PLoS Biology, Vol. 6, No. 10. (1 October 2008), e245.
    by Ichiro Hiratani, Tyrone Ryba, Mari Itoh, Tomoki Yokochi, Michaela Schwaiger, Chia-Wei Chang, Yung Lyou, Tim M Townes, Dirk Schübeler, David M Gilbert
    posted to origin_mapping mice es by Eroslavochka to the group JacksonLab on 2008-10-28 00:34:38 as **** along with 6 people and 1 group polivares Scis0000002 lp2 inesdesantiago stoffreg Zephyrus Roswell Cancer Crosstalk
  • Extrapolating ENCODE data to the whole human genome.
    Gene, Vol. 419, No. 1-2. (1 August 2008), pp. 66-69.
    by M Costantini, M Di Filippo, G Bernardi
    posted to encode_pilot chromatin_maps by Eroslavochka to the group JacksonLab on 2008-10-24 01:28:19 as **** along with 1 person gjuggler
  • Whole-genome maps of USF1 and USF2 binding and histone H3 acetylation reveal new aspects of promoter structure and candidate genes for common human disorders -- Rada-Iglesias et al. 18 (3): 380 -- Genome Res.
    posted to histone_acetylation chromatin_maps by Eroslavochka to the group JacksonLab on 2008-10-23 21:10:12 as ***
  • High-throughput mapping of origins of replication in human cells
    EMBO Reports, Vol. aop, No. current. (13 July 2007)
    by Isabelle Lucas, Aparna Palakodeti, Yanwen Jiang, David J Young, Nan Jiang, Anthony A Fernald, Michelle M Le Beau
    posted to replicator_sequence origin_mapping origin_library lamin chromatin_maps c-myc by Eroslavochka to the group JacksonLab on 2008-10-23 20:43:44 as **** along with 1 person polivares
  • DNA replication timing of the human beta-globin domain is controlled by histone modification at the origin -- Goren et al. 22 (10): 1319 -- Genes Dev.
    posted to s-phase_regulation origin_structure origin_function chromatin_maps by Eroslavochka to the group JacksonLab on 2008-10-23 20:20:36 as ***
  • In Xenopus Egg Extracts, DNA Replication Initiates Preferentially at or near Asymmetric AT Sequences
    Mol. Cell. Biol., Vol. 28, No. 17. (1 September 2008), pp. 5265-5274.
    by Slavica Stanojcic, Jean-Marc Lemaitre, Konstantin Brodolin, Etienne Danis, Marcel Mechali
    posted to replicator_sequence origin_mapping origin_library by Eroslavochka to the group JacksonLab on 2008-10-23 20:20:10 as ****
  • Genome-wide studies highlight indirect links between human replication origins and gene regulation.
    Proceedings of the National Academy of Sciences of the United States of America (6 October 2008)
    by Jean-Charles C Cadoret, Françoise Meisch, Vahideh Hassan-Zadeh, Isabelle Luyten, Claire Guillet, Laurent Duret, Hadi Quesneville, Marie-Noëlle N Prioleau
    posted to replicator_sequence replication_proteomic_machinery origin_structure origin_mapping origin_function orc chromatin_maps by Eroslavochka to the group JacksonLab on 2008-10-23 20:19:09 as *** along with 4 people and 1 group cisevol polivares inesdesantiago bpcusack BenosLab
  • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816.
    posted to encode_pilot chromatin_maps by Eroslavochka to the group JacksonLab on 2008-10-23 20:18:13 as read along with 27 people and 3 groups polivares timflutre pengchy raistrick guhjy cmmorel dpollard ilh djkt plofje ramensky joepickrell massivemayhem fishtank Garamonfok jmuhlich bioyang cabbagezs xingxu antonkratz mimulus_99 julianjonker gjuggler drbal maralena ep161302 jasonflannick Bioinformatics EisenLab SorgerLab
  • Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks
    by Daniel Zilberman, Devin Coleman-Derr, Tracy Ballinger, Steven Henikoff
    posted to plants chromatin_modifications chromatin_maps by Eroslavochka to the group JacksonLab on 2008-10-23 20:14:17 as ** along with 1 person and 1 group rabrower BenosLab
  • Overlapping euchromatin/heterochromatin- associated marks are enriched in imprinted gene regions and predict allele-specific modification -- Wen et al. 0 (2008): gr.067587.108v1 -- Genome Res.
    posted to chromatin_maps by Eroslavochka to the group JacksonLab on 2008-10-23 20:05:48 as *** along with 1 group BenosLab
  • Global organization of replication time zones of the mouse genome -- Farkash-Amar et al. 18 (10): 1562 -- Genome Research
    posted to no-tag by polivares to the group JacksonLab on 2008-10-23 18:45:49 as read along with 1 person Eroslavochka
  • The Insulator Binding Protein CTCF Positions 20 Nucleosomes around Its Binding Sites across the Human Genome
    PLoS Genet, Vol. 4, No. 7. (25 July 2008), e1000138.
    by Yutao Fu, Manisha Sinha, Craig L Peterson, Zhiping Weng
    posted to ctcf by polivares to the group JacksonLab on 2008-10-23 18:43:57 as ** along with 5 people and 1 group madreach cisevol djkt clearbluespring inesdesantiago BergmanLab
  • High-resolution profiling of histone methylations in the human genome.
    Cell, Vol. 129, No. 4. (18 May 2007), pp. 823-837.
    by A Barski, S Cuddapah, K Cui, TY Roh, DE Schones, Z Wang, G Wei, I Chepelev, K Zhao
    posted to no-tag by polivares to the group JacksonLab on 2008-10-23 18:36:43 as ** along with 12 people and 1 group raylim jernst giovenko guhjy kengg sebastien_vigneau jackjackjjj ghattem epigenetics ksha inesdesantiago dquest Plantandetc
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